Can you dig it? Parasites influence the rates of bioturbation in lakes and rivers.

Experimental setup for GAmmarus parasitism bioturbation experiment

This post was first published on the Cambridge Core blog, based on the original paper by Williams et al. It was selected as Parasitology‘s paper of the month for September 2019, and so is freely available for the month.

The impact of parasites can often reach beyond their individual hosts, shaping populations and communities in their ecosystems. Parasites often control the behaviour of their hosts, leading to their role as “ecosystem engineers,” changing the ways in which the hosts physically shape their environments.

In lakes and rivers, gammarid amphipods, small shrimp-like crustaceans, are known to act as ecosystem engineers by digging into the sand, in a process called bioturbation. Bioturbation is a major process in the ecosystem, as this digging alters the concentration of oxygen in the sand, the concentration of nutrients in the water, and the biological communities living in and on the sand. We wanted to know whether the amphipods would dig into the sand more or less when infected with behaviour-changing parasites, like Polymorphus minutus, and whether the temperature of the ecosystem influenced the rate of digging.

Continue reading “Can you dig it? Parasites influence the rates of bioturbation in lakes and rivers.”

Sustainability Through Stability

image001I recently took part in a Tansley working group, an initiative that has a main working theme of advancing the ecological foundations of sustainability science. In this specific case we are seeking to construct a unified framework to help understand the multidimensional stability of ecosystems.

In an era of increased human activity, significant climate change and biodiversity loss, an understanding of the mechanisms and drivers of ecosystem stability has vast implications for both ecological theory and the management of natural resources.

One large challenge in the study of ecological stability comes from the complexity of ecosystems. The dynamics of an ecosystem depend not only on the network structure, the interactions among different species, but also on external perturbations that vary in context, intensity and frequency.

Another huge challenge is the multidimensional nature of ecological stability, with its many measures and definitions including resistance, resilience and temporal variation, all of which are themselves interrelated. Stuart Pimm, a member of the Tansley working group, reviewed four measures of stability in one of his early publications in Science (Pimm, 1984) and one blog from Jeremy Fox even summarized 20 different stability concepts!

Both theoretical and empirical ecologists have spent decades exploring the role of community structure, interaction strength and disturbance in determining the dynamics and stability of ecosystems. However, most of these studies only focused on a single aspect of ecological stability, underestimating the impacts and recoveries of populations and communities.

Failure to consider the multidimensionality of stability is magnified when the relationships among these stability elements are quite fragile. For example, one lake or reservoir may maintain its stability in total biomass following a disturbance by adjusting its nutrient load, but the community composition has changed dramatically. 

To create a unified concept of stability across theoretical, field-based and experimental research the confusion in using and defining these different elements of stability must be cleared up.

A typical confusion arises from the usage of the term resilience, which can be defined as the recovery time or speed following a disturbance to a pre-disturbed state; for instance the time taken for an area of scrubland to recover from a wild fire. The method used to calculate resilience in the local stability of theoretical communities is impossible to detect in the real world. So there is an urgent need to fill this gap by making a framework that suits both empirical scientists and theory development.

And that is one of the main challenges the Tansley working group seeks to face. We aim to construct a framework of ecological stability across major global ecosystems through a review of the most up to date measures of ecological stability (both empirical and theoretical) using specific case studies. This will help researchers adopt a more comprehensive approach to investigate stability and facilitate the comparison across different systems and scales in the future. We will also evaluate the feasibility in applying theoretical stability measurements to real ecosystems and abandon those which will are next to impossible to obtain from the real world.

To communicate the importance of the stability concept to a much broader audience, we will provide videos as well as vivid examples to illustrate the concepts of the different stability elements and how to measure them. We have an enthusiastic belief that the Tansley group will make a big contribution to the standardization of concepts and measurement of the multidimensional stability.

Author: Marvin Qiang, qyang@tcd.ie, @MarvinQiangYang

Photo credit: http://www.changedbygrace.net/2012/09/21/faith-floods-and-finances/

What has nature ever done for us?

dogs watching tvAnti-environmentalists and apathists often ask why bother to conserve nature – what does it do for us? Cue enthusiastic green arm-waving and heavy sighs from environmental scientists and ecologists who have faced this attitude their entire careers.

Nature is undeniably important for the human race – we wouldn’t be here without plants fixing the sun’s energy into carbohydrates and producing oxygen as a by-product, we wouldn’t be able to grow any food to eat without the myriad of organisms which create and maintain the soil, and exposure to nature has numerous psychological and physical benefits for our health. And yet, it is not valued in political decision-making. The environment, particularly the living biological part of it, is a “cross-cutting” issue which means it’s ignored by most government departments, including those that should be valuing it the most (e.g. Department of the Environment, Community and Local Government; Department of Agriculture Food and the Marine; Department of Communications, Energy and Natural Resources). This is because most decision-making is driving by economics.

International momentum has been building for governments, businesses and organisations to begin valuing nature. This doesn’t just mean putting a price on nature – it’s not all about price-tags – but valuing natural capital in the same way that any other capital (financial, human, built etc.) would be valued. And accounting for this capital in decision-making processes at all levels (from individuals up to government policy).

Some countries and individual corporations have made good progress with this (e.g. the UK has a Natural Capital Committee, Coca-Cola and Puma have famously adopted Natural Capital Accounting systems), but there has been little progress in Ireland, until now.

In April, the first Natural Capital Ireland Conference was held, which brought together academics, government representatives from national and local levels, government organisations, NGOs, business and finance and other stakeholders. The point of the meeting was to try and increase understanding of valuing nature nationally, and progress natural capital accounting at all levels.

The report from this conference is now available on the Natural Capital Ireland website (www.naturalcapitalireland.com) and will be launched at the EPA Environment Ireland conference. In addition, the EPA and NPWS have been working with the conference organising committee to create a national Natural Capital Forum.

Whether this will bump the natural environment up the political agenda, and increase people’s interest and enthusiasm for nature remains to be seen… But we need to keep trying to convince people that nature is important, and that not having it is more expensive and economically damaging.

Author: Jane Stout, stoutj[at]tcd.ie

Seminar Series: Kendra Cheruvelil, Michigan State University/Queen’s University Belfast

landscape limnology

Part of our series of posts by final-year undergraduate students for their Research Comprehension module. Students write blogs inspired by guest lecturers in our Evolutionary Biology and Ecology seminar series in the School of Natural Sciences.

This week, views from Kate Purcell and Andrea Murray-Byrne on Kendra Cheruvelil’s seminar “Understanding multi-scaled relationships between terrestrial and aquatic ecosystems”. (See Kendra’s blog about her trip to TCD).

The Power of Knowledge

As the old saying goes: “knowledge is power”. As scientists, a comprehensive understanding of that which we are studying is the key in enabling us to implement our research in a practical manner. From the perspective of an ecologist, compiling a large dataset can be costly – both in time and money. However the benefits of having a centralized dataset can be invaluable. Dr Kendra Spence Cheruvelil, an associate professor at the Michigan State University, has carried out extensive work on lakes in Michigan. Her work highlights the importance of compiling knowledge into shared datasets.

Cheruvelil recently gave a seminar in Trinity College on her work on Michigan lakes. Cheruvelil explained how data on the lakes in Michigan from governmental departments is not standardized. The data can therefore be used to draw incorrect inferences about the lakes in question. This example highlights the need to have a collaborative database where such information can be shared.

As well as explaining the need for a complete, standardized dataset, Cheruvelil demonstrated the importance of understanding the regional spatial scale when extrapolating information to make inferences about lake systems. Cheruvelil and colleagues stated the importance of fully understanding systems from the local to the continental scale. According to Cheruvelil, in order to make correct inferences we need conceptual models of relationships across scales, large datasets, and robust modeling approaches to deal with these data.

Cheruvelil and colleagues studied 2,319 US lakes in 800,000 km2. Using two variables – total phosphorus and alkalinity – they found that there was a high level of among-region variation in lakes. The found that the amount of regional variation present depends on what you look at, and as spatial extent gets bigger so too does regional variation. The amount of regional variation therefore depends on the spatial extent, the response variable of interest (with total phosphorus < alkalinity) and the regionalized framework.

Why is knowing what drives ecosystem processes in lakes important? Cheruvelil made the point that having these data allows for interactions between local and regional scale variables to be accounted for. Inferences can then be made about these variables and how they may drive ecosystem processes in other lakes with less data. The landscape features driving lakes are multi-scaled (local and regional), both hydro-geomorphic and anthropogenic, difficult to disentangle and different according to the response variable of interest.

Cheruvelil’s research is important, especially from a management point of view. It shows the importance of using both local and regional scales when making inferences about any ecological system, including lake systems. Making better and more informed inferences about the driving factors behind the lakes are especially important as we’re in an era facing large-scale climate change.

Author: Kate Purcell

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Paint by numbers: using inferences as a guide to paint the bigger picture

Limnology is the study of inland waters, including lakes, rivers, streams and wetlands. Dr Kendra Cheruvelil is a landscape limnologist currently carrying out research on a huge dataset of lakes in the US. She began her talk by discussing the implications of this kind of work. Her research attempts to integrate freshwater and terrestrial landscapes. As she pointed out – the map of an area you choose to show depicts exactly what you want someone to see. She illustrated this point by showing different land use maps for the state of Michigan. Michigan looks like quite a dry place when you only include lakes on the map, but when streams and wetlands are also included the picture of the freshwater ecosystem is very different!

Cheruvelil compiled a huge multi-scaled (local and regional) and multi-themed (like geology and land use) dataset from existing databases.  These databases came from different organizations and in total she ended up with data on 2319 US lakes in a 800,000km2 area. This huge dataset was necessary for her equally big questions. Firstly she asked how much among-region variation is there, and secondly she wanted to know what the likely causes of this variation (if any) were.

Because ecosystem variation is driven by things like hydrology, geomorphology, as well as anthropogenic and atmospheric factors, on different temporal scales like decadal or seasonal, and different spatial scales like local or regional, the research area can be quite messy in your head (at least it was in mine!) but Cheruvelil broke it down nicely and made it a lot more digestible.

Two variables she chose to look at were total phosphorus and alkalinity. These were chosen as they can indicate stressors: total phosphorus as it can show eutrophication, and alkalinity as it can indicate acidification. They also provide a nice contrast as total phosphorus is considered to be important on a small scale, whereas alkalinity is broader as it has to do with geological features. Using hierarchical models to test the data (which I won’t dwell on because it’s a little above my head!), Cheruvelil found that a high proportion of variation is regional, for example about 75% of the variation in alkalinity was regional. This did, however, vary depending on which regionalization framework she used, but she picked a hybrid model that encompassed both freshwater and terrestrial factors, so despite the different results depending on the framework I think she gave good reasons for picking the one she eventually used.

As far as her second question – the likely causes of this among region variation – she tested the data with conditional hierarchical models (which again I won’t go into, but neither did she which was for the better I think!). Results here suggested that a few regional variables explained a high proportion of the regional variation. However, she was careful not to jump to conclusions that these variables were driving among region variation, and she clearly explained that there are most likely some confounding variables which are hard to disentangle using her methods.

Okay, so you want to study all these lakes and see if they vary among regions – but why? Why on earth is this important? These are valid questions that you may be asking yourself – and questions Cheruvelil was prepared for. She explained how making inferences from a sample lake is important when considering the bigger picture, for example when going from a local level of an individual lake and its watershed to the regional level of grouped lakes within a similar geographical region, to finally all the way up to a continental scale. The void she is filling with her research is the regional level – building models that will allow future researchers to extrapolate from their study lake and infer things at broader scales to see the bigger picture. This is important as most studies on ecosystems will be on a single lake, and I think the take home message was that findings at the local scale may or may not apply to other lakes, depending on how similar they are and if they are in similar regions.

Author: Andrea Murray-Byrne

Image Source: Landscape limnology research group http://www.fw.msu.edu/~llrg/