No time like the pheasant

 

Let’s run another photo competition. Starting today and running until Monday 18th May anyone can submit one photograph to this album here. Just log in with username ecoevoblog and password is the same. Don’t make it obvious that it’s your image in case it biases the judge. The theme for this month will be ‘Fowl Play’. Prizes will be determined in due course.

Author: Adam Kane, kanead[at]tcd.ie, @P1zPalu

Photo credit: https://commons.wikimedia.org/wiki/Aves#/media/File:Tauraco_hartlaubi-20081223b.jpg

The more the better?

birds-of-paradise

These days I’m writing up the discussion of my sensitivity analysis paper on missing data using the Total Evidence method (more about it here and here). One evident opening for proposing future improvement on my analysis is the obvious “let’s-do-it-again-with-more-data” one… But a recent Science paper by Jarvis et al made me reconsider that. Is more the always better?

Jarvis and his numerous colleagues just published one of the biggest bird phylogenies that contrasts with the previous reference one (by Jetz et al in Nature). In Jetz’s paper, the authors were interested in the relations among modern birds (read “non-dinosaurs ones”) and tackled the question by trying to sample the whole of bird biodiversity (9,993 species!). However, as in most analyses of this kind, the molecular data can be fairly poor (note that they still managed to collect a maximum of 15 genes for 6663 species). Even though the global picture of avian diversity is clear, some regions are less resolved than others and an obvious way to fix that would be to sample more genes per species. And that is, in a way, exactly what Jarvis and his colleagues tried to achieve.

In this new study, the authors went on sampling not 15, 70 or 150 genes but 8251 genes per species! This led to a really deep and long analysis – over 400 CPU years, and I thought 150 was long! – of the complete genome of birds. By the way, they use the name Total Evidence nucleotide tree (TENT) to design the results of their analysis which is pretty confusing since a total evidence tree means something quite different to me. But that’s just a semantic rant. Using this massive TENT, the authors fixed some previously poorly resolved nodes, redefined the names of ancient divergences among birds (with the Passerea – tits and relatives – and the Columbea – pigeons and relatives), demonstrated an explosive (“big-bang”) radiation after the K-T event and determined the patterns of certain traits evolution (such as raptoriality or vocal learning). In short a thorough work that allowed the authors to say: “The conflict we observe with other data types can no longer be considered to be due to error from smaller amounts of sequence data”. I feel that writing something like that in a paper is a nice achievement!

However – don’t get me wrong, this paper is yet a great example of collaborative work and insight in new methods – the sample size is… 45 species. In other words, Jetz et. al sampled 100% of the species but less than 1% of the data as for Jarvis et al., they sampled 100% of the data for less than 1% of the species. In this case, we have two extreme views of the same question (“how did avian diversity evolve?”) and in both cases, I think the macroevolutionary claims are weakened by the number of species or the amount of data… However, from a practical point of view, I think the method that included more species will be preferred by researchers since their species of interest are more likely to be present in that tree. What’s the best balance? Full genome or full sampling? I’ll leave it to you to decide…

Author

Thomas Guillerme, guillert[at]tcd.ie, @Tguillerme

Photo credit

http://everythingbirdsonline.com/

Bird Feeders

AWBVDSC_2691.jpeg-p194p512d2km1im218hp1hk2sjt-0It’s coming up to winter so people will be conscious that our garden birds need a helping hand to get through the cold months. Bird feeders will be stocked, bread served up and water dished out. In the UK alone, almost half of households provide supplementary food for birds throughout the year. And although songbirds are usually the species that come to mind when we think of provisioning food the same principle can apply to more exotic birds, notably vultures. Indeed conservationists have supplied extra food to these scavengers for decades. Instead of bread or berries, a carcass is left out for the vultures to feed on. A recent paper of ours advocates this technique for a population of African White-backed Vultures in Swaziland.

This country is home to the densest breeding population of this species so we should do our best to conserve them given the huge declines suffered by vultures throughout the Old World. In the paper we showed times when there isn’t enough food in Swaziland to feed the whole population which means the birds are forced to forage farther afield, most likely in South Africa. On the face of it this doesn’t seem problematic because South Africa has huge populations of herbivores which could supply carcasses to vultures. But the birds must fly over unprotected areas as well. This increases their chances that they’ll encounter a poisoned carcass, perhaps set out by a farmer to kill the terrestrial carnivores harassing his livestock.

It’s well known that vultures are particularly sensitive to poisons, especially NSAIDs. Their group foraging behaviour makes them even more susceptible too, the discovery of a carcass by one individual will bring in the rest of the soaring birds in visual range. The hope with creating vulture restaurants is the birds will focus on foraging for carrion in Swaziland, minimising the risk of poisoning.

Yet there are well known problems with supplying supplementary food for animals in general. They may act as an ecological trap for instance, drawing the birds into an area only for the fickle humans to stop the supply of food. Carrion is an unpredictable resource so vultures forage in a characteristic way to improve their chance of encountering it. If food is supplied in a predicable way there is a fear we may disrupt these behaviours. Another recently realised danger in providing supplementary food is that it can attract unwanted guests. Sites tailor made for vultures in South Africa were shown to draw in jackals and hyenas.

Given these issues practitioners need to think carefully about how they provide food. Perhaps the best approach is a series of sites supplying food at random which would best represent the distribution of naturally occurring carrion.

Author: Adam Kane, @P1zPalu, kanead[at]tcd.ie

Photo credit: Munir Virani

A tern-up for the books

Little Tern taking off from nest © Andrew Power and Peter Cutler
Little Tern taking off from nest © Andrew Power and Peter Cutler

The last two years have seen successive record breeding seasons for Little Terns (Sternula albifrons) on the Irish east coast, with over 350 pairs breeding in 2013 and over 400 pairs in 2014. These record years are the result of 30 years of dedicated efforts to rescue Little Terns as an Irish breeding species, after population collapses in the 1980s and 1990s. As part of the BirdWatch Ireland team involved in these two exceptional years, we reflect on the conservation success story which has led to this remarkable tern-around in fortunes. Continue reading “A tern-up for the books”

Dying without wings* Part I

Final longevity hourglass

Last week our newest EcoEvo@TCD paper came out in PRSB (it will be Open Access soon but currently it’s behind a pay wall – feel free to email me for a copy in the meantime. Also code to fit multiple PGLS models can be found here). This paper is exciting for me for two reasons – firstly because the science is really cool, and secondly because of how it came about. Today I want to focus on the paper itself, and in my next post I will explain how this collaborative project started. Continue reading “Dying without wings* Part I”

Kapapo, Kereru and Kaka, Oh My!

Before I moved to New Zealand birds were, well, birds. They were nice to see but I didn’t pay them much attention. But New Zealand is a bird paradise and as a biology student (I studied for my undergraduate degree at the University of Auckland) birds were the go-to exemplar of many biological concepts. With understanding often comes interest and I found myself increasingly interested in our avian friends, an interest which has stayed with me to this day. Continue reading “Kapapo, Kereru and Kaka, Oh My!”

A Raptor-ous Reception

Thanks to the DU ZooSoc, TCD staff and students were treated to an exhibition from Dublin Falconry last week. Set against the busy backdrop of joggers and Pav-frequenters, six beautiful birds of prey were the stars of their own lunch time show. Here’s a few pictures from the event, just a flavour of the stunning animals which we were privileged to see, touch (and hear!) up close. And for the full effect, have a look at Keith McMahon’s beautiful video.

Whooo's a pretty boy then? Barn Owl
Whooo’s a pretty boy then?
Barn Owl
Beautiful Scandinavian barn owl
Beautiful Scandinavian barn owl

 

Mmm, tasty finger Scandinavian morph of a barn owl
Mmm, tasty finger
Protective sleeve put to good work
Protective sleeve put to good work
Ready to take off... Peregrine falcon
Ready to take off…
Peregrine falcon
"I feel like chicken tonight..."  Peregrine falcon
“I feel like chicken tonight…”

 

Juvenile Common buzzard -  "If he looks like he's coming towards you then duck!"
Juvenile Common buzzard – “If he looks like he’s coming towards you then duck!”

 

What paint brushes? Bengal eagle owl
What paint brushes?
Bengal eagle owl

Author: Sive Finlay, sfinlay[at]tcd.ie, @SiveFinlay

Photo credits: Thomas Guillerme, guillert[at]tcd.ie, @TGuillerme

 

Sulawesi Bird Expedition 2013

Beach

Ah the summer, how I miss it! In mid-June I departed (on the horrendously long journey) to the beautifully sunny, tropical islands off the south-eastern coast of Sulawesi, Indonesia. No, I wasn’t on holidays; I am fortunate enough to call this part of the world my study site. During the six week visit, I aimed to gain further behavioural and ecological data on a number of bird species as part of my current PhD project – for more specifics on that see here. I am even more fortunate to be able to carry out this research with the financial and logistical support of Operation Wallacea, an internationally renowned conservation charity that works with researchers from all over the globe, from a variety of different disciplines. As part of this support, I work with students and volunteers in the field, helping them to design effective dissertation projects and field methods. This year I was joined by five students (as opposed to two last year) from a variety of universities in Ireland and the UK.

From the first day it was back to the usual diet (mostly consisting of rice) and routine: up at 4.30am for breakfast and out surveying by 6am. These surveys consisted of walking 1km transects through scrub, farmland and/or forest edge collecting data on my target species’ diets, competitors (via agonistic interactions), social habitats, courtship and breeding, as well as their foraging and flocking behaviours. In the evening we would establish new transects and then get stuck into data entry at night. This routine makes for days that are long and tiring but hugely rewarding. Watching birds so closely allows you to gain intimate insight into their lives and observe some fantastic interactions, such as family groups of Lemon-bellied White-eyes preening each other and pairs reinforcing bonds with gifts of food. You also see how tirelessly and (sometimes) viciously males will fight off other males in order to retain their mates and, therefore, mating privileges, as we saw in the beautifully adorned Olive-backed Sunbird. Spending so much time in the field, you come across a great variety of other wildlife including troops of macaques, the strange bear cuscus, giant monitor lizards, pythons, huge fruit bats and hairy and multicoloured caterpillars that you never touch, to pick out but a few.

An adult Lemon-bellied White-eye returning with food for its chicks
An adult Lemon-bellied White-eye returning with food for its chicks
A beautiful fruit bat relaxing in a banana tree
A beautiful fruit bat relaxing in a banana tree

I’m delighted to say that data collection went exceedingly well for the students and myself – that is, when the weather was on our side (we had a week of non-stop rain while Ireland and the UK were experiencing a heat-wave; typical!). We surveyed five islands in total and got some superb behavioural data on each of our five target species. While managing a large group like this was difficult and tiring at times, it was a great experience and the students were a great bunch really. In the company of the assistants and students on the project, as well as the many other members of staff, students and volunteers from other projects, with their combined wealth of experience and knowledge, it was fantastic to share ideas, brainstorm and discuss current/potential future projects.

The biggest highlight for me was catching up with the elusive ‘Wangi-wangi’ White-eye, a bird we know very little about. It was touch and go for a while, and I was getting quite worried to be honest, but eventually we got excellent data on their flocking and feeding behaviour and who they compete with, directly and indirectly. Between us, the group racked up a number of new bird records for the islands and saw some spectacular species such as the Great-billed Kingfisher, Rainbow Bee-eater, Yellow-eyed Imperial Pigeon, Great-billed Parrot, Yellow-billed Malkoha and Red-knobbed Hornbill. Phwoar!

The stunning Yellow-billed Malkoha, a Sulawesi endemic
The stunning Yellow-billed Malkoha, a Sulawesi endemic 

Sadly, this summer was the last of my field trips to Indonesia as part of my PhD project. I enjoyed it immensely and, for certain, I will be back. I am grateful to Operation Wallacea for allowing me to be involved in such a programme and I hope that they will continue to expand into more areas of this highly unique and understudied part of the world that is full of discoveries yet to be made.

Author and Photo credits:

Seán Kelly: kellys17[at]tcd.ie, @seankelly999

When Perseverance Pays Off

Takahe_noa

The history of science is, as the name suggests, the study of the historical side of science: the people, the process and the development of the knowledge and techniques that have made science the dominating force it is today. In popular culture the history of science is often told through individuals: the mavericks and geniuses so singular that only they could see the right path to take. The problem with this approach is that it does a mis-service to the hundreds and thousands of people who have worked so tirelessly to make the incremental advances in knowledge that accumulate until the snowball has built into an avalanche and the paradigm is ready to be shifted by whoever is lucky enough to see the pivot first (to hideously mix my metaphors).

Yet there are times when the ‘maverick’ status is not unwarranted. Often the term is used pejoratively to describe someone who will not let go of an idea long-since disproved. But on occasion there are people for whom the inability to give up pays off; and it’s one such person I wish to discuss here today.

The set-up: Otago, South Island, New Zealand, early 1910s. A boy stands in the local museum looking at an old black and white photo of a bird. This bird is unlike any he’s seen. It looks like a pukeko (a large moorhen-like bird) but it is maybe twice the size and three-times the bulk. It has a sharp yet heavy bill that takes up the entire front of the face; a stocky neck and strong bare legs. The legs and bill are the same colour but differ from the dark body. The feathers show signs of different colours on the back and wings though the black and white makes it difficult to be certain. The boy stares, enraptured, and looks at the label: Notornis (Maori: Takahe; Porphyrio hochstetteri): Extinct.

The boy was Geoffrey Orbell, and despite being told (probably repeatedly) that the takahē was extinct and had been since the 1890s, he continued to believe that they were still out there, hiding. Fiordland, the area where takahē were last seen alive, was still relatively unexplored and the mountains and valleys could easily hide a small population, or so Doc (as he was nicknamed due to his medical degree) believed. With a small group of friends he spent his free time tramping through the Murchison Mountains in search of the elusive (and supposedly extinct) bird.

I don’t know how long he searched, how many miles he tramped, how many friends he bored and how many false hopes he had dashed. But I do know that in 1948 he did what no one thought possible: he found a population of living takahē (the name now commonly used).

The discovery caused an immediate reaction and for a while Dr Orbell and his friends were international stars. Scientists hiked to the valley where the takahē had been found and, unusually for the time, recognised the importance of the discovery. Efforts to protect the birds were rapidly put in place. In a news report from 1950 (well worth watching for voice-over and musical accompaniment if nothing else) the population was estimated at 10 breeding pairs, yet this may have been an underestimate as the population was said to reach a low in 1982 of 118 birds.

Until the 1980s the takahē were largely left in peace but a steep decline in population numbers forced the New Zealand Department of Conservation (DOC) to step in. A captive breeding programme combined with translocation to predator-free reserves increased the population to 263 at the beginning of this year. This may not seem impressive for 30 years of active conservation but takahē, in common with many of New Zealand’s endangered birds, are classic K-selected species meaning they live a long time, are slow to reach maturity and have few offspring over the course of their lives.

Predatory rodents that prey on eggs and chicks and inbreeding depression are the main factors that hinder more rapid population growth. Luckily New Zealand has recovery strategies for many of their endangered species which involve the use of predator-free islands and mainland reserves. While little can be done to improve the genetic diversity, strenuous efforts are made to maintain it through closely monitored breeding programmes.

Takahē may not be completely safe from extinction, without active conservation they would almost certainly be extinct. If it were not for Dr Orbell and his passion and determination in the face of almost certain defeat it is highly likely that the takahē would have died out, high up in the mountains and with no one to mourn their loss.

Dr Geoffrey Orbell was an ear, nose, throat and eye doctor whose search for the takahē was just one part of his long and fascinating life. He died in 2007 at the age of 98 and was born on October 7th 1908. Happy Birthday Geoffrey!

Author:

Sarah Hearne; hearnes[at]tcd.ie, @SarahVHearne

Photo Source:

Wikicommons

The VIP Tweetment

As part of an ongoing census of the birds of Trinity College, we surveyed their diversity just outside our door.

Great Tit
Great Tit
Weight watchers
Weight watchers
Scales
Scales
Tags
Tags
Blue Tit
Blue Tit
Notes and nails
Notes and nails
A resting robin just before take off

Authors

Trinity College Zoology Students

Photo Credit

Trinity College Zoology Students