Lichens: The quiet witnesses of an ever-changing planet

By Ryan Brennan (Research Assistant in Botany and lichen enthusiast)

rybrenna@tcd.ie.

My first ever encounter with the Lilliputian world of lichens was when I was around
fourteen years old. Our biology class was covering the binomial system of naming
organisms. The lesson began with differentiating kingdoms and working our way
down to species. I remember raising my hand to ask my teacher a question that my
immature self treated as a “gotcha”, while also making myself look smart. I asked
something along the lines of: “What about lichen? Aren’t they one thing made up of
two species? How can they fit into this system?”.


The question was not an original thought. The night before, I had watched Sheldon
Cooper make some strange joke about lichens on The Big Bang Theory (note: the
author does not think The Big Bang Theory is a good show, and prides himself on his
now immaculate taste in media). My teacher hastily googled the answer, told me that
lichen was a fungus, and I promptly forgot about lichens for another seven years.
For most people, this is roughly the amount of headspace lichens will ever occupy. A
fleeting thought about whether the apple tree in the garden is dying because of the
weird stuff on its bark. A moment of concern over whether that stain on the wall is
bird poo they would rather not sit on.


But occasionally, unfortunately in moments few and far between, people investigate
further and realise what they are looking at, is a lichen. Then they notice a smidge of
Xanthoria on the rubber seal of their car door. They realise the white and grey spots
on the concrete path are in fact not chewing gum ironed into the ground by countless
shoes. Soon, they can’t stop. They see lichens everywhere, and, importantly, begin
to notice their absence.


This absence is not accidental. Lichens are remarkably tolerant of cold, desiccation,
and starvation, even being able to survive attached to a space shuttle bound for the
International Space Station. They lack roots, cuticles, and any meaningful control
over what they absorb from the atmosphere. Everything they need, and everything
that harms them, arrives dissolved in rainwater or drifting invisibly through the air,
making them a barometer for environmental change.


This sensitivity has earned them a reputation as biological indicators, although this
label often undersells their role. Lichens do not simply signal change, they record it.
Shifts in species composition, growth form, and abundance accumulate over years
and decades, quietly tracking alterations in air quality, nutrient inputs, and climate.
When nitrogen-tolerant species spread across bark and stone, they reflect not only
pollution, but a reorganisation of ecological opportunity. When communities
disappear entirely, the absence itself becomes the message.


Despite this, lichens remain taxonomic outsiders. They are often introduced as
curiosities, mentioned briefly in lectures on fungi or algae before being set aside.
This marginalisation is not because they are unimportant, but frequently because
they are inconvenient. Lichens complicate neat biological categories and challenge the idea of organisms as discrete, self-contained units. To take them seriously
requires an acceptance of complexity and interdependence that is easy to
acknowledge in theory, but harder to accommodate in practice.

Picture from British Lichens


Yet still, lichens are among the most persistent witnesses on the planet. Many grow
slowly enough that a single thallus may span decades or centuries. They endure on
rock faces, tree trunks, and walls long after other organisms have come and gone. In
doing so, they integrate environmental conditions over time, bearing silent testimony
to both stability and disturbance. Where rapid change favours short-lived species,
lichens remain: absorbing, responding, and recording.


Perhaps this is why noticing lichens alters how landscapes are read. Pavements and
walls become chronologies rather than backdrops. Trees become living records of
atmospheric history. Clean air becomes visible, and polluted air leaves a biological
trace. Lichens do not demand attention, but once seen, they are difficult to ignore.
In a world defined by accelerating change, lichens offer a different perspective. They
do not react loudly or dramatically. They persist, adjust, or vanish, and in doing so
they tell a quiet, cumulative story about the planet we are shaping. All that is required
of us is to learn how to listen.


Ireland was once home to a strong and internationally respected community of
lichenologists. This is not immediately obvious today, given how rarely lichens
appear in contemporary botanical discourse, but for much of the late nineteenth and
early twentieth centuries the island was an important centre for lichen study. Its mild,
humid climate and relative lack of industrialisation produced landscapes rich in
epiphytic and saxicolous species, drawing the attention of specialists from Ireland
and beyond.

Picture from British Lichens


Among the most significant figures in this tradition was Matilda Knowles, whose work
laid much of the foundation for modern Irish lichenology. Knowles was meticulous,
wide-ranging in her surveys, and deeply committed to recording the lichen flora of
Ireland at a time when such work was neither fashionable nor well supported. Her
collections and publications documented species distributions that, in many cases,
no longer exist in the same form today. Knowles was not working in isolation. She was part of a broader network of naturalists who treated lichens as worthy of serious attention, contributing to floras, herbaria, and field clubs. This community understood that lichens were not marginal organisms, but integral components of Ireland’s landscapes. That tradition, however, has steadily eroded.


In the decades that followed, lichenology in Ireland began to dwindle. The reasons
are not unique to lichens. Increasing specialisation, shrinking taxonomic training, and
the prioritisation of more economically visible organisms have all played a role.
Lichens are slow to study, difficult to identify, and resistant to quick results. They do not fit neatly into grant cycles or undergraduate syllabi. As expertise retired or
passed on, it was rarely replaced. The consequence of this decline is not merely academic.

Without people trained to recognise and record lichens, changes in their communities often go unnoticed. In a country where air quality, land use, and climate are all shifting, this represents a blind spot in our understanding of environmental change.


Yet the tools to reverse this are modest. Lichenology does not require expensive
equipment or remote field sites. It begins with attention. With looking closely at tree
bark, stone walls, roofs, and pavements. With learning a handful of common genera,
then a few species, and allowing curiosity to do the rest. This was how earlier
lichenologists began, and it remains how most expertise is built. There is also something quietly radical about noticing lichens. It is an act that resists speed and spectacle. It asks for patience, for familiarity with place, and for an acceptance that meaningful change is often gradual.


If lichens are the heralds of an ever-changing planet, then we must decide if they are
held up high enough to be heard, their story continuing to be recorded either way.
Ireland’s landscapes still carry their stories, written in grey crusts, leafy rosettes, and
orange stains on stone. The challenge now is not to rediscover lichens, but to
remember that they were always here, waiting to be seen.


If you are curious to learn more about lichen, please let me know! Just beware that I
may not stop talking about them once I start. Feel free to stop me to chat whenever
you see me or send me an email at rybrenna@tcd.ie.

Thanks for reading!

Wolves Are Good Boys Too

brown wolf standing on green grass
Figure 1: The grey wolf (Canis Lupus)

We’ve all been there, trying to get some out of reach object only to dejectedly ask for the assistance of another. Turns out, this behavior has been with us for most of our lives. It is known that children as young as 12 months will start to point at certain objects that they desire but are, for obvious reasons, unable to obtain (Figure 2). This behaviour is known as imperative pointing and, as it turns out, you don’t even need to point to be able to do it. In fact, gaze alteration, the process of looking between the desired object and a specific individual, is seen as an analog of this in our four-legged friends, the canines. This behavior has been widely examined in domesticated dogs, who humans have a long history of cohabitation with. Indeed, many of us can probably offer anecdotal evidence of this in our own dogs, be it looking at treats on a shelf, or their favourite toys on kitchen tabletops. However, surprisingly, it has never been studied in wolves, the wild relatives of our beloved pooches. In 2016, Heberlein et al. set to change this, and their findings have some important implications, not least concerning our understanding of the very domestication of dogs itself.

Figure 2: A cartoon of imperative pointing in infants

The experimental premise was relatively simple. A group of grey wolves (subspecies: timber wolf) and a group of dogs (breed not given), were both obtained from animal shelters in Europe and were raised from puppyhood with daily human interaction. When the canines were around 2 years old, the experiment began with a pre-feeding and training phase. This involved an experimental room with 3 boxes (Figure 3), each too high for the canines to reach by jumping, the poor guys. In this phase, food was first shown to the animals, one animal at a time, and then clearly placed in each of the boxes. If the animal looked at the box and then at the human, the human would automatically get the food for them. The wolves and dogs were then introduced to 2 new humans, a mean competitor who would steal the food, and a helpful cooperator, who would share any food the animals identified. This whole process would serve to inform the canines that the humans could provide them with out of reach food, but that only the cooperator would actually give them any of it. Why go through all this trouble you may ask? Well, turns out there were some very clever scientists involved in the experiment. Those involved wanted to avoid the possibility that gaze alteration for food could simply be the result of a food human association, i.e., if I stare at a box and then a human, then the human must give me food. If gaze alteration reflects some true communicative intention on the part of the animals, then one would expect that they should ask for help mainly from the cooperative human, I know I definitely prefer working with cooperative humans. Once trained, the test was ready to begin.

The actual experiment involved a tasty sausage being presented to a lone wolf/dog and then being hidden in one of 3 boxes located in the room, the same room used in pre-training. Then, either the cooperative human or the competitive human, the same humans the animals had been trained with, entered the room. They would passively observe the animal for 1 minute after which they would go to the box they believed the animal was looking at. If correct then the sausage would wither be given to the animal, if the cooperator was present, or eaten by the human, if the competitor was present. The process was repeated a total of 4 times, twice with each type of human.

Figure 3: The experimental setup. Stars represent the food boxes, the circle is where the human was positioned, and D is the rooms door. 

The results were incredibly interesting. In most cases, the canines, both wolves and dogs, showed the correct food location to the cooperator but not the competitor (P = 0.006) (Figure 4). Importantly, there was no difference between this behaviour between the two species (P = 0.24). As an aside, P values are statistical values that tell you if there is a significant difference between two things. All you need to know is 1) Any P value less than 0.05 means that the event is unlikely to have happened by chance and 2) That scientists are very fond of including them in their papers. In any case, what’s even more interesting is what these results can tell us about their evolutionary histories. While both directed the cooperative human to the food box, wolves spent more time looking at the food itself when compared to the dogs (P = 0.03). This may reflect a higher food motivation present in wolves. Intuitively this makes sense, as, while some of us would surely like them to be, wolves are not pets and so need to hunt for food themselves. In addition, the ability of dogs to referentially communicate with humans was thought to be a result of their domestication and close association with us ever since. The results of this experiment would, however, suggest that this ability was at least present in the common ancestor of the wolves and domestic dogs. Therefore, rather than this communication being a product of domestication, it is more likely that the skill of referential communication had evolved in canines to promote the social coordination needed for group living, i.e., living in their packs. In other words, the common ancestor of today’s canines may have also been a good boy.

Figure 4: A graph comparing the percentage of showing behaviour, i.e., gaze alteration, in wolves and dogs towards competitive and cooperative humans.  

In summary, dogs, are not alone in their ability to ability to referentially communicate with us. This ability is shared with the grey wolf and the choice to work with a cooperative human over a competitive one provides evidence that there is some conscious thought in this decision-making process (both in dogs and wolves). While this raises important questions about the evolutionary histories of these animals, more intriguing questions remain. Namely, what other well-known traits of dogs are also present, but undiscovered, in wolves. Personally, I am very much excited to find out.  

Figure 5: Grey wolf puppies playing next to their mother.

For more information on this topic, you can read the paper discussed here (free of charge)

Blog written by Niall Moore, a final year undergraduate student, as part of an assignment writing blogs about an animal behaviour paper!

Celebrating bees on World Bee Day – Getting to know them better!

The authors

Irene Bottero is a 3rd year PhD student in Botany (Trinity College Dublin). She is part of PoshBee project (https://poshbee.eu/) and in her thesis she is evaluating the impact of different habitat types on pollinators, specifically, honeybees, bumblebees, solitary bees, hoverflies, and butterflies.

Elena Zioga is a 3rd year PhD student in Botany (Trinity College Dublin). She is part of PROTECTS project (https://protects.ucd.ie/) and in her thesis she is evaluating the levels of pesticide residues in pollen and nectar of plants growing in Ireland.

Getting to know them better!

The 20th of May is declared as the ‘World Bee Day’ and its purpose is to acknowledge the importance of bee pollinators in our ecosystem. Animal pollinators play an important role in the reproduction of many plant species (90% benefit from animal pollination – https://onlinelibrary.wiley.com/doi/full/10.1111/j.1600-0706.2010.18644.x), including crops (crops pollinated by animals make up 35% of global food production – https://royalsocietypublishing.org/doi/10.1098/rspb.2006.3721), ensuring the abundance and good quality of fruits, nuts, and seeds, which are crucial for human nutrition. Beyond food, pollinators also contribute directly to medicines, biofuels, fibers (e.g. cotton and linen), and construction materials.

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Endophytes for Heavy Metal Bioremediation

Human activity has affected every part of the biosphere – the soil is no exception. Agricultural and industrial practices have deteriorated soil health, impacting ecosystem function as well as food security. For the past two years, I have been working with the e-Seed Start-up to develop an innovative technique called endophytic inoculation, which uses naturally occurring endophytes (microorganisms that live in plant tissues) to improve plants’ resistance to stresses. Endophytic inoculation has a broad range of application, from maintaining and stimulating soil health to improving crop production and reducing the need for pesticides. In our most recent paper, we explored the possibility of using endophytes to enhance plants’ resistance to heavy metal-contaminated soil, paving the way for using endophytic inoculation to help detoxify soils polluted with heavy metals.

Cover image credit: http://modernfarmer.com/2014/04/microbes-will-feed-world-real-farmers-grow-soil-crops/

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Nature and Wellbeing

A Long Read by Cian White

Photo by James Orr
Credit: James Orr

For anyone living in a city during a pandemic, the benefit of parks to your physical and mental health is obvious. There is space to properly social distance, space to meet up with friends, space to exercise or kick a ball around, benches to sit on, air to breathe, life to live. Then there is the life in the parks, the trees and shrubs and birds and insects, all the stuff that comes under the vague heading of greenspace or nature. So, to celebrate World Cities day and in the interest of public health, let us explore a very interesting area of research developing at the intersection of ecology and psychology: meaningful nature experiences.

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Sustainable redevelopment: visions of a post-lockdown world

Another sunrise brings another day of working from my hotel room. But today there’s a difference; the rain has eased and a smattering of sunshine dances on my balcony. I open my door and am struck by the fresh ocean breeze. It’s that fleeting time of year when Okinawa’s oppressive humidity is kept at bay by rain showers, producing occasional perfect days. I can practically taste the salt of the ocean as I watch the gentle lull of a distant fishing boat. But perhaps most noticeably, my ears prick up at the melodic and almost metallic cha-ko-lee of a pair of light-vented bulbuls (Pycnonotus sinensis) passing by. I watch the birds for a second before my eyes trail slowly back to the sea. Just as they do, I catch a flash of red. It must have been a ruddy kingfisher (Halcyon coromanda) darting from the tree it was perched in. A few minutes later my identification is confirmed as I hear the sweeping, descending call of the individual in question.

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Is a seal cull needed to protect fish stocks?

For decades, Irish fishermen have called for Irish seals to be culled. The call for a seal cull has been made especially vociferously in the west of the country, and has been brought into the national discussion when backed by politicians and highlighted by illegal acts of violence against seals. Just weeks ago, Michael Healy-Rae, Independent TD for Kerry, was in the media demanding a cull. Though many people perceive seals to compete with fishermen, any impact on fisheries is not well supported by the research. Studies have found that seals do not generally compete for the same fish resources as fishermen, and modelling has indicated that the presence or absence of seals has little impact on fisheries catches.

Continue reading “Is a seal cull needed to protect fish stocks?”