PhD Retrospective: Finding new bird species in Sulawesi

Almost as long as I can remember, I’ve wanted to be a Zoologist. Growing up on a steady diet of Attenborough documentaries, I dreamed of exploring new lands, discovering weird and wonderful species. I wanted to be the next Darwin. The next Wallace. In a lot of ways, my PhD research has been the fulfilment of that dream. It all started with my undergraduate thesis project in the Trinity College Dublin (TCD) Zoology Department. When Prof Nicola Marples and Dr David Kelly offered a project studying speciation on islands, I jumped at it. I spent the summer before the final year of my undergraduate island hopping in south-east Sulawesi, Indonesia, collecting data on how the physical traits of sunbird species had changed on isolated islands. Nicola and Dave’s project fieldwork was organised by Operation Wallacea, so we worked with Operation Wallacea staff as we moved around the islands and got to interact with scientists focusing on some of the other unique wildlife of Sulawesi.

Sulawesi is a region of massive interest to evolutionary biology. It is the intersection where Asian and Australian flora and fauna meet, and is separated by deep ocean trenches ensuring it has never been connected to a continent, allowing many unique species to develop there. As well as providing a fascinating study system, South-east Sulawesi has some incredible wildlife. Knobbed Hornbills, Tarsiers and Sulawesi Bear Cuscus are weird and wonderful treats. In particular, working with the birds of this region was incredible, and I was adamant it wouldn’t end up being a once in a lifetime experience! As well as allowing me to follow my island-hopping ambitions, this project kicked off what I predict will be a lifelong obsession. Having previously been a typical fan of large charismatic mammals, I became a full convert to the world of birds (it’s fundamentally all about the birds!).

Read the full post on the Operation Wallacea blog!

Undergrad Thesis Collection 2019

Every year, the Trinity College Dublin Zoology, Botany, and Environmental Science moderatorship students (final year undergraduates) complete their own research projects related to their course. It has been my absolute privilege to spend time with these talented students and to watch their projects take shape. I am blown away by the dedication they show, the incredible topics they cover, and the way in which they approach their investigations. After their theses are submitted, the students hold a poster session where they present their work. From beetles to beer and back again, this year’s students have done impressive and solid work. I hope all our readers enjoy learning about these projects as much as I did! If you’d like to contact any of these students to congratulate them, offer them prizes/jobs, or learn more about their projects, most of them have included contact information. Without further ado, I’ll let them take it away!
-Maureen Williams, PhD Student, Zoology

Continue reading “Undergrad Thesis Collection 2019”

Battle of the sexes – Niche contraction in females but not males in high density island populations

olive-backed sunbird sexual dimorphism and competition in Sulawesi, Indonesia

This blog was first published on #theBOUblog. Check it out at https://www.bou.org.uk/blog-oconnell-olive-backed-sunbird-sexual-dimorphism/

Going right back to the time of Darwin, competition has always been seen as a driver of evolution. When we think of natural selection we often think of hyaenas and lions fighting it out on the plains of Africa, or a pack of wolves hassling a bear over a carcass. Resource competition like this is a daily part of survival for most animals, with a delicate balance of power between competitors which can change in different environments. However competition for resources takes place not only between species (interspecific competition), but within them (intraspecific competition), and often this is where competition is at its most fierce. Sexually dimorphic species present a special case when studying competition in different environments. They are species where the males and females are physically different, often in body size, but also in colouration and other characteristics. Males and females in sexually dimorphic species often occupy different but interlinked ecological niches. If intraspecific competition becomes more intense within a population of a sexually dimorphic species then one sex may suffer more than the other due to being smaller. In our recent paper in Emu – Austral Ornithology we report on one such case with a niche contraction in female Olive-backed Sunbirds (Cinnyris jugularis), but not males, in a highly competitive environment on small islands. This work was carried out on the remote and understudied islands of South-east Sulawesi, Indonesia (Figure 1), where a joint team of scientists from Trinity College Dublin (TCD) and Halu Oleo University (UHO) have been carrying out research into bird evolution since 1999.

Continue reading “Battle of the sexes – Niche contraction in females but not males in high density island populations”

Kingfisher Evolution in the Wallacea Region

Studying diversification in the Todiramphus kingfishers of Sulawesi often brought to mind the adage, ‘what is rare is beautiful’. Though I certainly also learned that rare beauties can be incredibly frustrating! While I could be guaranteed to catch my other main study taxa, Zosterops white-eyes, by the dozen in the right habitat, Collared Kingfishers (Todiramphus chloris) and Sacred Kingfishers (Todiramphus sanctus) were much more elusive. This made them maddening study species, but ensured that every time I got to grips with one was a special moment. Each bird caught was measured and had a few flank feathers taken before release. Even the most disappointing site could be made worthwhile by catching a kingfisher. In particular, I’ll never forget a particularly fetid swamp in the backwoods of Sulawesi, as I’m pretty sure all the mosquitos in the world lived there. It yielded our worst ever bird catches, but two crucial Collared Kingfishers! These moments of elation have stuck with me, and have ensured that the Todiramphus kingfishers are the study species I’m most fond of.

Darren O’Connell and Adi Karya examine birds, while being examined by passers-by. Photo by Suliman La Ode.

Continue reading “Kingfisher Evolution in the Wallacea Region”

Room for one more?: Egg fostering in seabirds

Picture 1 and cover picture

When attempting to conserve a rare animal population sometimes every individual counts. Conservationists regularly go the extra mile to protect their study species. The conservation efforts implemented for the Little Tern (Sternula albifrons) in Britain and Ireland demonstrate the success these efforts can have. This species nests on shingle beaches and had experienced catastrophic population declines due to increasing development and use of beaches by people. Little Tern adults are very vulnerable to disturbance and their eggs are particularly vulnerable to walker’s boots! Thankfully a network of wardened colonies, run by a mixture of conservation organisations and enthusiastic volunteer groups, succeeded in stabilising this species’ population.

Continue reading “Room for one more?: Egg fostering in seabirds”

Wild Goose Chase – cannon netting on the Inishkea Islands

Last March we had the fantastic opportunity to assist with cannon netting Barnacle Geese on the Inishkea Islands, a wild Atlantic outpost off the coast of Co. Mayo. This research was part of Dr David Cabot’s long term study of the Inishkea Barnacle Goose population, which breed in Greenland and return to the west coast of Ireland each winter. Dr Cabot has been studying this population since 1961, providing the longest running dataset of any Arctic migrant breeding in Europe. He established the project as an undergraduate in our very own Zoology Department in Trinity (back in the good old days when Catholics could only join Trinity with the permission of their Archbishop, lest they be corrupted by the insidious Protestant ethos of the College of the Holy and Undivided Trinity of Queen Elisabeth!!). Our part in Inishkea was to help catch geese to attach unique inscribed colour ring combinations to their legs. This allows individuals to be tracked to provide information on individual longevity and productivity. Re-sighting of these colour ringed individuals coupled with satellite tracking data have also allowed the timing and route of this population’s migration to be mapped out. Such monitoring is important as a large proportion of the Greenland population of Barnacle Geese winter in Ireland, and Inishkea is one of their most important wintering grounds. Continue reading “Wild Goose Chase – cannon netting on the Inishkea Islands”

Dig for victory

In a previous post I showed what I think being a palaeontologist is all about, especially the point that palaeontologists are different from oryctologists. The first ones study changes of biodiversity through time, the second ones extract fossils (but again, both are far from exclusive).

Here is a short summary of  experience working at Upper Cretaceous excavation sites in the South of France (that’s around 80-65 million years old) namely in the Bellevue excavation site in Esperaza run by the Musée des Dinosaures.

First step is to find a place to dig.

Step 1.1: find something

Why along the road? It doesn’t have to be but it has two clear advantages: you can park your car next to it and it’s usually rich in fresh outcrops of rock (where you can find more fossils than in a crop field!).

Step 1.2: try again and again!

The second step, once you’ve decided that there might be something in the outcrop you’ve just explored, is to remove all the “annoying stuff”. To palaeontologists that obviously means all the wonderful fauna and flora and their associated environment (usually soil) that are growing above the potential fossiliferous site (how rude of them!).

Step 2: remove all the annoying stuff

Once you’ve removed the layer of living stuff, you can start the long and interesting part: hitting rocks with a hammer and a pike during the hottest days of summer.

Step 3: start hitting the rocks

Step 4: find something (hopefully!)

Finally, with a bit (a huge bit) of luck, you’ll find a fossil that was worth all this hassle.

Step 5.1: clean the fossil

Once you’ve found the fossil, the first step is to clean the surface facing you and start to build a trench around it in order to pour plaster over it and bring it to the lab. As you can see, paint brushes are useless here too: the hammer and the pike make ideal tools for the surrounding trench and an oyster knife and a smaller hammer do the cleaning jobs. Oh yeah, and a tube of glue. After around 80 million years, the bones get a bit fragile.

Step 5.2: clean the fossil… again!

The last step is to properly clean the fossil in the lab by removing it from all the surrounding rock. The best tools are mini pneumatic-drills and loads of patience. When all that is done, the palaeontologist can start to work on the fossil.

You can find more impressive pictures on the Musée des Dinosaures webpage.

Author: Thomas Guillerme, guillert[at]tcd.ie, @TGuillerme

Images: Thomas Guillerme and Sébastien Enault (with the kind authorisation of Jean Le Loeuff). Feature image: http://www.libraryofbirmingham.com/

What is(n’t) palaeontology like?

paleontology

After rereading Sive’s excellent blog post on what is a zoologist or at least what is it like to study it, I remember having a slightly similar difficulty in explaining my background in palaeontology. Reactions range from: “Oh… Palaeontology? That’s like the origins of humans and stuff?” or “So you go on excavations and find ancient Roman pottery?” to “Bheuuh, want another beer?”. What frustrated me is that none of these reactions are correct but neither are they totally incorrect (especially the last one!).

Palaeontology is not archaeology

Most people that have only a vague idea of what palaeontology is are usually not big fans of Jurassic Park and don’t know Alan Grant so they usually associate palaeontology with Ross Geller or Indiana Jones. Being not a big fan of TV series, I don’t know whether Ross is a good representation of the reality of life as a palaeontologist but I know that Indiana is not. Not even a little bit. He’s an archaeologist. That might be a nerdy detail for some but to understand what palaeontology is about, it is important to understand the difference. Even though both archaeologists and palaeontologists study the past based on what they find in the ground (and in books!), the time scales involved make the two disciplines impossible to compare. Archaeologists are mainly interested in human culture (they might find animal bones but they are usually the fragments of crafted objects). In contrast, palaeontologists are interested in the remains of life that occurred before human civilisation. Therefore we have two very different time scales here: from years to centuries or, at a push, millennia for archaeologists and from hundreds to millions of millennia (or billion of years) for palaeontologists.

Palaeontology is not about excavations

Palaeontologists do not excavate fossils, that’s a job for Oryctologists. Okay, I’m being picky with the terms here but, again, the distinction is important. Most palaeontologists are also oryctologists, meaning that they go into the field and do excavations as the basis for their scientific work (yeah, in the end, that’s not a cliché, one of the nicest parts of the job is field work!). However, not all palaeontologists are oryctologists (even though most are) and many oryctologists are not palaeontologists. Again, palaeontology is not only about digging up fossils and putting them in museums (contrary to what this song suggests), it is about the study of changes that occurred on our planet through deep time (geography, climate, etc…) and how they affected living organisms (evolution, extinction, etc…).

JP-Digsite

While we’re on the subject of oryctology, there is a huge public misconception about excavations. Most people that have seen Jurassic Park might think that, in the 90’s, one could just go into the field armed with nothing but a paint brush and happily stumble across a complete Velociraptor (Deinonychus!) skeleton which just had to be cleaned out from the surrounding layers of dust. This scenario would certainly make palaeontology way more straightforward and easy but it would also mean that excavations would be just boring routines where a hoover would do a better job than a naively enthusiastic undergrad student!

Even though excavation techniques are at least as numerous as excavation sites, the paint brush must be one of the rarest tools. Personally, I’ve tried things like hammering a cliff with a pike, shoveling dust and blocks of stone, digging in solid clay with an oyster knife or sifting tons of bags of sediments after diluting it in acid in a lab. None of these activities are similar to the restful act of flicking away sand with a brush (but they’re still a lot of fun!).

Palaeontology is not dusty

The two points above are understandably confusing for the general public because of the Hollywood image of palaeontologists, depicted as “adventurers, not really serious, but entertaining” (to translate a quote from Eric Buffetaut’s book “À quoi servent les dinosaures?”). One might think that other scientists would have a better understanding of palaeontology. However, even if they generally understand the discipline and its implications better than the general public: “Paleontology has a reputation as a dry and dusty discipline, stymied by privileged access to fossil specimens that are interpreted with an eye of faith and used to evidence just-so stories of adaptive evolution” (Cunningham et al 2014).

Thankfully, however, the discipline that studies traces of evolution has not escaped evolution of its own. The “privileged access to fossil specimens” has been replaced by either huge online databases (just one example and one other among thousands) or accessible and well-curated collections. The “eye of faith” has been replaced by X-Ray tomography, Surface scanners and synchrotrons; and the “just-so stories” are now replaced by integrative studies leading to a new vision of the history of life

Palaeontology is… great

The differences between a nerdy “Indianajonesomorph” oryctologist that knows all of the dinosaurs’ names by heart and a realistic palaeontologist are what makes palaeontology so interesting. More than the taxonomy, taphonomy, comparative anatomy and cladistic tools that palaeontologists use, palaeontology is about the idea that everything is constantly changing and that we live in just one fleeting moment in the vast history of life.

However, I still like the image of the “adventurers, not really serious, but entertaining”… As long as palaeontologists don’t take this image seriously themselves!

Author: Thomas Guillerme, guillert[at]tcd.ie, @TGuillerme

Images: Wikicommons

The Wakatobi Flowerpecker: the reclassification of a bird species and why it matters

Wakatobi Flowerpecker - Male

I posted previously about my PhD research studying bird populations from the tropical and biodiversity-rich region of Sulawesi, Indonesia. I am happy to announce that the first paper as part of this research has just been published in the open access journal PLOS ONE. To read the full paper for free, click here. This work is a collaborative effort from staff in the Department of Zoology in Trinity College Dublin and Haluoleo University in Sulawesi. Here, I’d like to discuss the wider importance of the findings of this study.

My current research focuses on bird populations from peninsular South-east Sulawesi and the nearby Wakatobi Islands. The main focus of this paper was to reassess the taxonomic status of a population of birds from the Wakatobi Islands (i.e. whether these birds represent a species or subspecies). The birds in question belong to the flowerpecker family (Dicaeidae); a group of small and colourful, arboreal passerines found from Southeast Asia to Australia. The Wakatobi birds were originally described as a separate species (Dicaeum kuehni) from those on mainland Sulawesi by the renowned avian taxonomist Ernst J. Hartert. However, for reasons that remain unclear in the literature, the Wakatobi birds were later reclassified as a subspecies of the Grey-sided Flowerpecker (Dicaeum celebicum) from mainland Sulawesi. Therefore we decided the Wakatobi populations were deserving of reassessment. From comparisons of plumage and morphology (that is, the measurement of various features such as a bird’s wing and bill), as well as estimates of genetic divergence and phylogenetic relationships between Wakatobi and Sulawesi populations, our results suggest the Wakatobi birds deserve to be recognised as a distinct species. We have therefore recommended the Wakatobi populations be reclassified as Dicaeum kuehni, a species found only on the Wakatobi archipelago and put forward the common name ‘Wakatobi Flowerpecker’.  For more detailed methods and results check out the paper.

“So what?”, you might say. Well, despite centuries of work from naturalists aiming to estimate the number of different species that exist or have existed on Earth (be they animal, plant, fungus, bacteria, etc) and further understand their evolutionary relationships, we still have a lot to learn! Therefore, this research adds another tiny piece to this enormous and incomplete jigsaw. Through a greater understanding of life on Earth we can attempt to answer some of the great philosophical questions, such as ‘Where and how did life start?’; ‘How and why do new species appear?’;  ‘Why has life evolved to become as it is today?’; and ‘How have we, as humans, come to be?’. Anyway, let’s be honest, who doesn’t enjoy learning of a recently discovered species or simply one they haven’t heard of before (be they as cute as the recently discovered olinguito or as frighteningly ugly as the goblin shark)? But the endeavour to discover species and classify and quantify the diversity on life on Earth brings us much more than entertainment and endless fascination, it also has very practical applications. Data on the distribution and conservation status of species are one of the major sources of information used to inform conservation policy. Therefore, as we are in the midst of an extinction crisis, it is vital that these data are accurate.

In order to maximise our understanding biodiversity, particularly in the remote and poorly known Sulawesi region of Indonesia, we require multi-disciplinary research. For example, take a look at Figure 1 below. On the left are a male (above) and a female (below) Grey-sided Flowerpecker from mainland Sulawesi. On the right are a male (above) and a female (below) Wakatobi Flowerpecker. They look very similar, right? This is true. However there are subtle but consistent differences in plumage between the species (again, see the paper for more info on this). Without the collection of detailed morphological data and the generation of genetic sequences, we may have incorrectly concluded that these make up just one species, when in fact they are morphologically distinct, reproductively isolated and genetically very different. This demonstrates the need for modern research, not just in Sulawesi, but globally, to employ integrative research, combining traditional comparisons of colour, size and shape with modern genetic and phylogenetic analyses.

Figure 1. Plumage comparisons-p18pjcggcs1dgo1ulm1sor9s214bc
Figure 1. A comparison of plumage characteristics between male (top row) and female (bottom row) Grey-sided Flowerpeckers (left) and Wakatobi Flowerpeckers (right).

Despite the knowledge that the Sulawesi region is home to a large number of remarkable birds that are found nowhere else in the world, it has remained relatively poorly studied. Furthermore, there has been a lack of integrative ornithological research in the area and very little genetic sampling. Therefore, it is likely that avian species richness for the Sulawesi region is underestimated and that numerous bird species are awaiting description. On top of this, Sulawesi’s biodiversity is facing major threats from a rapidly expanding human population and mass habitat destruction, among other things. Unless we can encourage more multi-disciplinary research within the region, we will likely fail to recognise evolutionarily distinct lineages and run the risk of losing them forever.

Our current findings inspire many further questions. For example, why have the flowerpeckers on the Wakatobi islands become so different to their close relatives on mainland Sulawesi? In other words, what are the evolutionary pressures that have driven the divergence of the Wakatobi Flowerpeckers? By investigating these questions, we hope to learn more about the evolutionary processes of speciation and adaptation to living on islands. As the Wakatobi Flowerpecker is found only on the Wakatobi Islands, the protection status afforded to the islands may require reassessment. Furthermore, considering one unique bird species has evolved on the Wakatobi, could there be more? Watch this space.

Author and Images:  Seán Kelly, kellys17[at]tcd.ie, @seankelly999

Mooching in Madagascar

I recently returned from a short stint of fieldwork in Madagascar. The purpose of our trip was to run some behavioural tests of echolocation in tenrecs but things didn’t exactly go according to plan. Therefore we had plenty of time to explore and experience some of the wonders of the 8th continent.

Here’s a few of our wildlife highlights…

Shower lizard
Our friend from the shower

Spider webs
Enormous spider webs which span an entire river bed!

Moth case
Case from a bagworm moth

Indri
Spot the Indri (like four year olds in panda suits..)

Tree frog
What a poser

Chameleon
Just hanging around

Camouflaged frog
Spot the frog

Red bellied lemurs
Inquisitive red bellied lemurs (Eulemur rubriventer)

Hemicentetes semispinosus
Tenrec in a bucket! Hemicentetes semispinosus

 Author and Images: Sive Finlay, sfinlay[at]tcd.ie, @SiveFinlay